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Work on iterators and recycling of biosequences

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This commit is contained in:
Eric Coissac
2022-01-14 23:11:36 +01:00
parent ef66ca4972
commit e8fff6477b
22 changed files with 350 additions and 111 deletions
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8
pkg/obiapat/pcr.go
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@ -241,7 +241,7 @@ func _Pcr(seq ApatSequence, sequence obiseq.BioSequence,
match, _ := sequence.Subsequence(fm[0], fm[1], opt.pointer.circular)
annot["forward_match"] = match.String()
match.Destroy()
(&match).Recycle()
annot["forward_error"] = erri
@ -249,7 +249,7 @@ func _Pcr(seq ApatSequence, sequence obiseq.BioSequence,
match, _ = sequence.Subsequence(rm[0], rm[1], opt.pointer.circular)
match = match.ReverseComplement(true)
annot["reverse_match"] = match.String()
match.Destroy()
(&match).Recycle()
annot["reverse_error"] = errj
results = append(results, amplicon)
@ -315,14 +315,14 @@ func _Pcr(seq ApatSequence, sequence obiseq.BioSequence,
match, _ := sequence.Subsequence(rm[0], rm[1], opt.pointer.circular)
match.ReverseComplement(true)
annot["forward_match"] = match.String()
match.Destroy()
(&match).Recycle()
annot["forward_error"] = errj
annot["reverse_primer"] = reverse.String()
match, _ = sequence.Subsequence(fm[0], fm[1], opt.pointer.circular)
annot["reverse_match"] = match.String()
match.Destroy()
(&match).Recycle()
annot["reverse_error"] = erri
results = append(results, amplicon)