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Code refactoring

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This commit is contained in:
Eric Coissac
2022-01-14 17:32:12 +01:00
parent 5753723618
commit ef66ca4972
16 changed files with 260 additions and 260 deletions
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16
pkg/obiformats/ecopcr_read.go
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@ -163,12 +163,12 @@ func ReadEcoPCRBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenc
opt := MakeOptions(options)
new_iter := obiseq.MakeIBioSequenceBatch(opt.BufferSize())
new_iter.Add(1)
newIter := obiseq.MakeIBioSequenceBatch(opt.BufferSize())
newIter.Add(1)
go func() {
new_iter.Wait()
close(new_iter.Channel())
newIter.Wait()
close(newIter.Channel())
}()
go func() {
@ -181,7 +181,7 @@ func ReadEcoPCRBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenc
slice = append(slice, seq)
ii++
if ii >= opt.BatchSize() {
new_iter.Channel() <- obiseq.MakeBioSequenceBatch(i, slice...)
newIter.Channel() <- obiseq.MakeBioSequenceBatch(i, slice...)
slice = make(obiseq.BioSequenceSlice, 0, opt.BatchSize())
i++
@ -192,10 +192,10 @@ func ReadEcoPCRBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenc
}
if len(slice) > 0 {
new_iter.Channel() <- obiseq.MakeBioSequenceBatch(i, slice...)
newIter.Channel() <- obiseq.MakeBioSequenceBatch(i, slice...)
}
new_iter.Done()
newIter.Done()
if err != nil && err != io.EOF {
log.Panicf("%+v", err)
@ -203,7 +203,7 @@ func ReadEcoPCRBatch(reader io.Reader, options ...WithOption) obiseq.IBioSequenc
}()
return new_iter
return newIter
}
func ReadEcoPCR(reader io.Reader, options ...WithOption) obiseq.IBioSequence {