obitools/obitools4
2
0
Fork 0
mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00
Code Issues Packages Projects Releases Wiki Activity

First functional version of a blackboard and a blackboard based obicount

Browse Source
This commit is contained in:
Eric Coissac
2024-07-31 23:16:45 +02:00
parent dfe2fc3d43
commit f36b39bfa3
40 changed files with 1236 additions and 257 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
pkg/obichunk/subchunks.go
View File

@ -90,7 +90,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
for iterator.Next() {
batch := iterator.Get()
source := batch.Source()
if batch.Len() > 1 {
classifier.Reset()
@ -117,7 +117,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
ss := obiseq.MakeBioSequenceSlice()
for i, v := range ordered {
if v.code != last {
newIter.Push(obiiter.MakeBioSequenceBatch(nextOrder(), ss))
newIter.Push(obiiter.MakeBioSequenceBatch(source, nextOrder(), ss))
ss = obiseq.MakeBioSequenceSlice()
last = v.code
}
@ -127,7 +127,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequence,
}
if len(ss) > 0 {
newIter.Push(obiiter.MakeBioSequenceBatch(nextOrder(), ss))
newIter.Push(obiiter.MakeBioSequenceBatch(source, nextOrder(), ss))
}
} else {
newIter.Push(batch.Reorder(nextOrder()))