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First functional version of a blackboard and a blackboard based obicount

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This commit is contained in:
Eric Coissac
2024-07-31 23:16:45 +02:00
parent dfe2fc3d43
commit f36b39bfa3
40 changed files with 1236 additions and 257 deletions
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8
pkg/obiformats/universal_read.go
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@ -15,6 +15,8 @@ import (
"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
)
type SequenceReader func(reader io.Reader, options ...WithOption) (obiiter.IBioSequence, error)
// OBIMimeTypeGuesser is a function that takes an io.Reader as input and guesses the MIME type of the data.
// It uses several detectors to identify specific file formats, such as FASTA, FASTQ, ecoPCR2, GenBank, and EMBL.
// The function reads data from the input stream and analyzes it using the mimetype library.
@ -172,11 +174,11 @@ func ReadSequencesFromFile(filename string,
case "text/fasta":
return ReadFasta(reader, options...)
case "text/ecopcr2":
return ReadEcoPCR(reader, options...), nil
return ReadEcoPCR(reader, options...)
case "text/embl":
return ReadEMBL(reader, options...), nil
return ReadEMBL(reader, options...)
case "text/genbank":
return ReadGenbank(reader, options...), nil
return ReadGenbank(reader, options...)
case "text/csv":
return ReadCSV(reader, options...)
default: