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First functional version of a blackboard and a blackboard based obicount

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This commit is contained in:
Eric Coissac
2024-07-31 23:16:45 +02:00
parent dfe2fc3d43
commit f36b39bfa3
40 changed files with 1236 additions and 257 deletions
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7
pkg/obiiter/distribute.go
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@ -61,9 +61,12 @@ func (iterator IBioSequence) Distribute(class *obiseq.BioSequenceClassifier, siz
go func() {
iterator = iterator.SortBatches()
source := ""
for iterator.Next() {
seqs := iterator.Get()
source = seqs.Source()
for _, s := range seqs.Slice() {
key := class.Code(s)
slice, ok := slices[key]
@ -84,7 +87,7 @@ func (iterator IBioSequence) Distribute(class *obiseq.BioSequenceClassifier, siz
*slice = append(*slice, s)
if len(*slice) == batchsize {
outputs[key].Push(MakeBioSequenceBatch(orders[key], *slice))
outputs[key].Push(MakeBioSequenceBatch(source, orders[key], *slice))
orders[key]++
s := obiseq.MakeBioSequenceSlice()
slices[key] = &s
@ -95,7 +98,7 @@ func (iterator IBioSequence) Distribute(class *obiseq.BioSequenceClassifier, siz
for key, slice := range slices {
if len(*slice) > 0 {
outputs[key].Push(MakeBioSequenceBatch(orders[key], *slice))
outputs[key].Push(MakeBioSequenceBatch(source, orders[key], *slice))
}
}