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First functional version of a blackboard and a blackboard based obicount

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This commit is contained in:
Eric Coissac
2024-07-31 23:16:45 +02:00
parent dfe2fc3d43
commit f36b39bfa3
40 changed files with 1236 additions and 257 deletions
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4
pkg/obiiter/fragment.go
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@ -20,9 +20,11 @@ func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
}()
f := func(iterator IBioSequence, id int) {
source := ""
for iterator.Next() {
news := obiseq.MakeBioSequenceSlice()
sl := iterator.Get()
source = sl.Source()
for _, s := range sl.Slice() {
if s.Len() <= minsize {
@ -52,7 +54,7 @@ func IFragments(minsize, length, overlap, size, nworkers int) Pipeable {
s.Recycle()
}
} // End of the slice loop
newiter.Push(MakeBioSequenceBatch(sl.Order(), news))
newiter.Push(MakeBioSequenceBatch(source, sl.Order(), news))
sl.Recycle(false)
} // End of the iterator loop