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Several bug in annotation management

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This commit is contained in:
Eric Coissac
2022-10-12 23:01:47 +02:00
parent aae3398701
commit f8df48338d
9 changed files with 124 additions and 13 deletions
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4
pkg/obiapat/pcr.go
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@ -275,7 +275,7 @@ func _Pcr(seq ApatSequence,
(opt.MaxLength() == 0 || length <= opt.MaxLength()) {
amplicon, _ := sequence.Subsequence(fm[1], rm[0], opt.pointer.circular)
annot := amplicon.Annotations()
goutils.CopyMap(annot, sequence.Annotations())
goutils.MustFillMap(annot, sequence.Annotations())
annot["forward_primer"] = forward.String()
match, _ := sequence.Subsequence(fm[0], fm[1], opt.pointer.circular)
@ -350,7 +350,7 @@ func _Pcr(seq ApatSequence,
amplicon = amplicon.ReverseComplement(true)
annot := amplicon.Annotations()
goutils.CopyMap(annot, sequence.Annotations())
goutils.MustFillMap(annot, sequence.Annotations())
annot["forward_primer"] = forward.String()
match, _ := sequence.Subsequence(rm[0], rm[1], opt.pointer.circular)