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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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8
pkg/obichunk/chunk_on_disk.go
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@ -35,12 +35,12 @@ func find(root, ext string) []string {
return a
}
func ISequenceChunkOnDisk(iterator obiiter.IBioSequenceBatch,
func ISequenceChunkOnDisk(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier,
sizes ...int) (obiiter.IBioSequenceBatch, error) {
sizes ...int) (obiiter.IBioSequence, error) {
dir, err := tempDir()
if err != nil {
return obiiter.NilIBioSequenceBatch, err
return obiiter.NilIBioSequence, err
}
bufferSize := iterator.BufferSize()
@ -49,7 +49,7 @@ func ISequenceChunkOnDisk(iterator obiiter.IBioSequenceBatch,
bufferSize = sizes[0]
}
newIter := obiiter.MakeIBioSequenceBatch(bufferSize)
newIter := obiiter.MakeIBioSequence(bufferSize)
newIter.Add(1)