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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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9
pkg/obichunk/chunks.go
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@ -1,16 +1,17 @@
package obichunk
import (
log "github.com/sirupsen/logrus"
"sync"
log "github.com/sirupsen/logrus"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
)
func ISequenceChunk(iterator obiiter.IBioSequenceBatch,
func ISequenceChunk(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier,
sizes ...int) (obiiter.IBioSequenceBatch, error) {
sizes ...int) (obiiter.IBioSequence, error) {
bufferSize := iterator.BufferSize()
@ -18,7 +19,7 @@ func ISequenceChunk(iterator obiiter.IBioSequenceBatch,
bufferSize = sizes[0]
}
newIter := obiiter.MakeIBioSequenceBatch(bufferSize)
newIter := obiiter.MakeIBioSequence(bufferSize)
newIter.Add(1)