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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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8
pkg/obichunk/subchunks.go
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@ -56,9 +56,9 @@ func (by _By) Sort(seqs []sSS) {
// End of the sort interface
//
func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
func ISequenceSubChunk(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier,
sizes ...int) (obiiter.IBioSequenceBatch, error) {
sizes ...int) (obiiter.IBioSequence, error) {
bufferSize := iterator.BufferSize()
nworkers := 4
@ -71,7 +71,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
bufferSize = sizes[1]
}
newIter := obiiter.MakeIBioSequenceBatch(bufferSize)
newIter := obiiter.MakeIBioSequence(bufferSize)
newIter.Add(nworkers)
@ -88,7 +88,7 @@ func ISequenceSubChunk(iterator obiiter.IBioSequenceBatch,
return neworder
}
ff := func(iterator obiiter.IBioSequenceBatch,
ff := func(iterator obiiter.IBioSequence,
classifier *obiseq.BioSequenceClassifier) {
ordered := make([]sSS, 100)