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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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8
pkg/obiformats/ecopcr_read.go
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@ -120,7 +120,7 @@ func __read_ecopcr_bioseq__(file *__ecopcr_file__) (*obiseq.BioSequence, error)
return bseq, nil
}
func ReadEcoPCR(reader io.Reader, options ...WithOption) obiiter.IBioSequenceBatch {
func ReadEcoPCR(reader io.Reader, options ...WithOption) obiiter.IBioSequence {
tag := make([]byte, 11)
n, _ := reader.Read(tag)
@ -166,7 +166,7 @@ func ReadEcoPCR(reader io.Reader, options ...WithOption) obiiter.IBioSequenceBat
opt := MakeOptions(options)
newIter := obiiter.MakeIBioSequenceBatch(opt.BufferSize())
newIter := obiiter.MakeIBioSequence(opt.BufferSize())
newIter.Add(1)
go func() {
@ -208,7 +208,7 @@ func ReadEcoPCR(reader io.Reader, options ...WithOption) obiiter.IBioSequenceBat
return newIter
}
func ReadEcoPCRBatchFromFile(filename string, options ...WithOption) (obiiter.IBioSequenceBatch, error) {
func ReadEcoPCRBatchFromFile(filename string, options ...WithOption) (obiiter.IBioSequence, error) {
var reader io.Reader
var greader io.Reader
var err error
@ -216,7 +216,7 @@ func ReadEcoPCRBatchFromFile(filename string, options ...WithOption) (obiiter.IB
reader, err = os.Open(filename)
if err != nil {
log.Printf("open file error: %+v", err)
return obiiter.NilIBioSequenceBatch, err
return obiiter.NilIBioSequence, err
}
// Test if the flux is compressed by gzip