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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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8
pkg/obiformats/universal_read.go
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@ -43,7 +43,7 @@ func GuessSeqFileType(firstline string) string {
}
func ReadSequencesFromFile(filename string,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
options ...WithOption) (obiiter.IBioSequence, error) {
var file *os.File
var reader io.Reader
var greader io.Reader
@ -53,7 +53,7 @@ func ReadSequencesFromFile(filename string,
if err != nil {
log.Fatalf("open file error: %v", err)
return obiiter.NilIBioSequenceBatch, err
return obiiter.NilIBioSequence, err
}
reader = file
@ -72,7 +72,7 @@ func ReadSequencesFromFile(filename string,
tag, _ := breader.Peek(30)
if len(tag) < 30 {
newIter := obiiter.MakeIBioSequenceBatch()
newIter := obiiter.MakeIBioSequence()
newIter.Close()
return newIter, nil
}
@ -98,5 +98,5 @@ func ReadSequencesFromFile(filename string,
filename, filetype)
}
return obiiter.NilIBioSequenceBatch, nil
return obiiter.NilIBioSequence, nil
}