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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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18
pkg/obiformats/universal_write.go
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@ -10,9 +10,9 @@ import (
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter"
)
func WriteSequence(iterator obiiter.IBioSequenceBatch,
func WriteSequence(iterator obiiter.IBioSequence,
file io.Writer,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
options ...WithOption) (obiiter.IBioSequence, error) {
iterator = iterator.Rebatch(1000)
@ -22,7 +22,7 @@ func WriteSequence(iterator obiiter.IBioSequenceBatch,
batch := iterator.Get()
iterator.PushBack()
var newIter obiiter.IBioSequenceBatch
var newIter obiiter.IBioSequence
var err error
if len(batch.Slice()) > 0 {
@ -42,24 +42,24 @@ func WriteSequence(iterator obiiter.IBioSequenceBatch,
return iterator, nil
}
return obiiter.NilIBioSequenceBatch, fmt.Errorf("input iterator not ready")
return obiiter.NilIBioSequence, fmt.Errorf("input iterator not ready")
}
func WriteSequencesToStdout(iterator obiiter.IBioSequenceBatch,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
func WriteSequencesToStdout(iterator obiiter.IBioSequence,
options ...WithOption) (obiiter.IBioSequence, error) {
options = append(options, OptionDontCloseFile())
return WriteSequence(iterator, os.Stdout, options...)
}
func WriteSequencesToFile(iterator obiiter.IBioSequenceBatch,
func WriteSequencesToFile(iterator obiiter.IBioSequence,
filename string,
options ...WithOption) (obiiter.IBioSequenceBatch, error) {
options ...WithOption) (obiiter.IBioSequence, error) {
file, err := os.Create(filename)
if err != nil {
log.Fatalf("open file error: %v", err)
return obiiter.NilIBioSequenceBatch, err
return obiiter.NilIBioSequence, err
}
options = append(options, OptionCloseFile())