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rename the iterator class

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This commit is contained in:
Eric Coissac
2023-01-22 22:04:17 +01:00
parent 4592855095
commit f97f92df72
37 changed files with 399 additions and 354 deletions
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24
pkg/obiiter/workers.go
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@ -27,7 +27,7 @@ func AnnotatorToSeqWorker(function SeqAnnotator) SeqWorker {
// Moreover the SeqWorker function, the method accepted two optional integer parameters.
// - First is allowing to indicates the number of workers running in parallele (default 4)
// - The second the size of the chanel buffer. By default set to the same value than the input buffer.
func (iterator IBioSequenceBatch) MakeIWorker(worker SeqWorker, sizes ...int) IBioSequenceBatch {
func (iterator IBioSequence) MakeIWorker(worker SeqWorker, sizes ...int) IBioSequence {
nworkers := 4
buffsize := iterator.BufferSize()
@ -39,7 +39,7 @@ func (iterator IBioSequenceBatch) MakeIWorker(worker SeqWorker, sizes ...int) IB
buffsize = sizes[1]
}
newIter := MakeIBioSequenceBatch(buffsize)
newIter := MakeIBioSequence(buffsize)
newIter.Add(nworkers)
@ -49,7 +49,7 @@ func (iterator IBioSequenceBatch) MakeIWorker(worker SeqWorker, sizes ...int) IB
}()
f := func(iterator IBioSequenceBatch) {
f := func(iterator IBioSequence) {
for iterator.Next() {
batch := iterator.Get()
for i, seq := range batch.slice {
@ -69,8 +69,8 @@ func (iterator IBioSequenceBatch) MakeIWorker(worker SeqWorker, sizes ...int) IB
return newIter
}
func (iterator IBioSequenceBatch) MakeIConditionalWorker(predicate obiseq.SequencePredicate,
worker SeqWorker, sizes ...int) IBioSequenceBatch {
func (iterator IBioSequence) MakeIConditionalWorker(predicate obiseq.SequencePredicate,
worker SeqWorker, sizes ...int) IBioSequence {
nworkers := 4
buffsize := iterator.BufferSize()
@ -82,7 +82,7 @@ func (iterator IBioSequenceBatch) MakeIConditionalWorker(predicate obiseq.Sequen
buffsize = sizes[1]
}
newIter := MakeIBioSequenceBatch(buffsize)
newIter := MakeIBioSequence(buffsize)
newIter.Add(nworkers)
@ -92,7 +92,7 @@ func (iterator IBioSequenceBatch) MakeIConditionalWorker(predicate obiseq.Sequen
}()
f := func(iterator IBioSequenceBatch) {
f := func(iterator IBioSequence) {
for iterator.Next() {
batch := iterator.Get()
for i, seq := range batch.slice {
@ -114,7 +114,7 @@ func (iterator IBioSequenceBatch) MakeIConditionalWorker(predicate obiseq.Sequen
return newIter
}
func (iterator IBioSequenceBatch) MakeISliceWorker(worker SeqSliceWorker, sizes ...int) IBioSequenceBatch {
func (iterator IBioSequence) MakeISliceWorker(worker SeqSliceWorker, sizes ...int) IBioSequence {
nworkers := 4
buffsize := iterator.BufferSize()
@ -126,7 +126,7 @@ func (iterator IBioSequenceBatch) MakeISliceWorker(worker SeqSliceWorker, sizes
buffsize = sizes[1]
}
newIter := MakeIBioSequenceBatch(buffsize)
newIter := MakeIBioSequence(buffsize)
newIter.Add(nworkers)
@ -135,7 +135,7 @@ func (iterator IBioSequenceBatch) MakeISliceWorker(worker SeqSliceWorker, sizes
log.Println("End of the batch slice workers")
}()
f := func(iterator IBioSequenceBatch) {
f := func(iterator IBioSequence) {
for iterator.Next() {
batch := iterator.Get()
batch.slice = worker(batch.slice)
@ -154,7 +154,7 @@ func (iterator IBioSequenceBatch) MakeISliceWorker(worker SeqSliceWorker, sizes
}
func WorkerPipe(worker SeqWorker, sizes ...int) Pipeable {
f := func(iterator IBioSequenceBatch) IBioSequenceBatch {
f := func(iterator IBioSequence) IBioSequence {
return iterator.MakeIWorker(worker, sizes...)
}
@ -162,7 +162,7 @@ func WorkerPipe(worker SeqWorker, sizes ...int) Pipeable {
}
func SliceWorkerPipe(worker SeqSliceWorker, sizes ...int) Pipeable {
f := func(iterator IBioSequenceBatch) IBioSequenceBatch {
f := func(iterator IBioSequence) IBioSequence {
return iterator.MakeISliceWorker(worker, sizes...)
}