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Code reefactoring

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This commit is contained in:
Eric Coissac
2022-01-14 16:10:19 +01:00
parent 45a1765a03
commit ff40222902
13 changed files with 68 additions and 92 deletions
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8
pkg/obiapat/pcr.go
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@ -195,7 +195,7 @@ func __pcr__(seq ApatSequence, sequence obiseq.BioSequence,
match, _ := sequence.Subsequence(fm[0], fm[1], opt.pointer.circular)
annot["forward_match"] = match.String()
match.Revoke()
match.Destroy()
annot["forward_error"] = erri
@ -203,7 +203,7 @@ func __pcr__(seq ApatSequence, sequence obiseq.BioSequence,
match, _ = sequence.Subsequence(rm[0], rm[1], opt.pointer.circular)
match = match.ReverseComplement(true)
annot["reverse_match"] = match.String()
match.Revoke()
match.Destroy()
annot["reverse_error"] = errj
results = append(results, amplicon)
@ -269,14 +269,14 @@ func __pcr__(seq ApatSequence, sequence obiseq.BioSequence,
match, _ := sequence.Subsequence(rm[0], rm[1], opt.pointer.circular)
match.ReverseComplement(true)
annot["forward_match"] = match.String()
match.Revoke()
match.Destroy()
annot["forward_error"] = errj
annot["reverse_primer"] = reverse.String()
match, _ = sequence.Subsequence(fm[0], fm[1], opt.pointer.circular)
annot["reverse_match"] = match.String()
match.Revoke()
match.Destroy()
annot["reverse_error"] = erri
results = append(results, amplicon)