16 Commits

Author SHA1 Message Date
9965370d85 Manage a lock on StatsOnValues 2025-06-17 16:46:11 +02:00
5a3705b6bb Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands. 2025-03-25 16:44:46 +01:00
8671285d02 add the --min-sample-count option to obiclean. 2025-02-24 08:48:31 +01:00
05bf2bfd6c Add option related to agrep match on obigrep and obiannotate 2024-09-09 16:52:13 +02:00
d88de15cdc Refactoring codes for removing buffer size options. An some other changes...
Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce
2023-03-07 11:12:13 +07:00
072b85e155 change the model for representing paired reads and extend its usage to other commands 2023-02-23 23:35:58 +01:00
85349668d0 Add some options to obiannotate 2023-02-16 13:32:27 +01:00
20b16c0ba1 Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
2022-11-22 15:06:09 +01:00
29563aa94e Rename the Length methods Len to follow GO standart 2022-11-17 11:09:58 +01:00
d0f63fda56 add functionalities to the expression
predicate evaluations
2022-09-28 16:13:20 +02:00
011898bd9d A first version of obigrep. Normally fully functionnal, but not fully tested 2022-02-25 07:29:52 +01:00
abcf02e488 Start to use leveled log 2022-02-24 12:14:52 +01:00
eaf65fbcce Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools 2022-02-24 07:08:40 +01:00
2e7c1834b0 Big change iin the data model, and a first version of obiuniq 2022-02-21 19:00:23 +01:00
27556ce81f Start of implementing binary file format 2022-02-07 11:57:08 +01:00
98a4363d22 obimultiplex saves unassigned sequence 2022-02-01 23:25:19 +01:00