11 Commits

Author	SHA1	Message	Date
Eric Coissac	03b5ce9397	Patch a bug in obitag when some reference sequences have taxid absent from the taxonomy	2025-03-27 16:45:02 +01:00
Eric Coissac	0df082da06	Adds possibility to extract a taxonomy from taxonomic path included in sequence files	2025-01-30 11:18:21 +01:00
Eric Coissac	795df34d1a	Changes to be committed: ... modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go	2024-12-19 13:36:59 +01:00
Eric Coissac	3d06978808	a functional new version of obifind	2024-11-24 19:33:24 +01:00
Eric Coissac	36327c79c8	Changes to be committed: ... modified: .gitignore new file: pkg/obitax/default_taxonomy.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonnode.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonset.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obifind/iterator.go modified: pkg/obitools/obifind/options.go	2024-11-16 10:01:49 +01:00
Eric Coissac	f5d79d0bc4	update api documentation	2024-11-16 05:59:41 +01:00
Eric Coissac	03f4e88a17	Fisrt functional version	2024-11-14 19:10:23 +01:00
Eric Coissac	9471fedfa1	Fisrt step in the obitax rewriting	2024-11-08 09:48:16 +01:00
Eric Coissac	abaede48b5	Refactoring of some code	2022-08-23 11:07:39 +02:00
Eric Coissac	011898bd9d	A first version of obigrep. Normally fully functionnal, but not fully tested	2022-02-25 07:29:52 +01:00
Eric Coissac	f53bf1b804	First commit	2022-01-13 23:27:39 +01:00