10 Commits

Author	SHA1	Message	Date
Eric Coissac	03b5ce9397	Patch a bug in obitag when some reference sequences have taxid absent from the taxonomy	2025-03-27 16:45:02 +01:00
Eric Coissac	795df34d1a	Changes to be committed: ... modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go	2024-12-19 13:36:59 +01:00
Eric Coissac	3d06978808	a functional new version of obifind	2024-11-24 19:33:24 +01:00
Eric Coissac	36327c79c8	Changes to be committed: ... modified: .gitignore new file: pkg/obitax/default_taxonomy.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonnode.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonset.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obifind/iterator.go modified: pkg/obitools/obifind/options.go	2024-11-16 10:01:49 +01:00
Eric Coissac	f5d79d0bc4	update api documentation	2024-11-16 05:59:41 +01:00
Eric Coissac	03f4e88a17	Fisrt functional version	2024-11-14 19:10:23 +01:00
Eric Coissac	9471fedfa1	Fisrt step in the obitax rewriting	2024-11-08 09:48:16 +01:00
Eric Coissac	4a0b20484f	Add the --taxonomic-path option to obiannotate ... Former-commit-id: 385309a1c4bc5ed33aeaafc63eedb9fc552f78a6	2024-02-27 20:10:26 +01:00
Eric Coissac	29563aa94e	Rename the Length methods Len to follow GO standart	2022-11-17 11:09:58 +01:00
Eric Coissac	f53bf1b804	First commit	2022-01-13 23:27:39 +01:00