11 Commits

Author SHA1 Message Date
0df082da06 Adds possibility to extract a taxonomy from taxonomic path included in sequence files 2025-01-30 11:18:21 +01:00
9471fedfa1 Fisrt step in the obitax rewriting 2024-11-08 09:48:16 +01:00
bd855c4965 Adds CSV as an input format
Former-commit-id: a365bb6947064adc2709d66df05fa54c6fe47fad
2024-07-03 21:04:27 +02:00
1835cb2cf3 remove sonic which only works on AMD64
Former-commit-id: 5073957b4706b68896006ee0f7bc30e49ff72c3b
2024-06-24 14:53:18 +02:00
c1f03cb1f6 Switch to faster json library go-json and sonic
Former-commit-id: ab9b4723f1dcf79fe5c073fff4d86f4f6969edfd
2024-06-23 00:36:08 +02:00
93f9dcb95f Reducing memory allocation events
Former-commit-id: c94e79ba116464504580fc397270ead154063971
2024-06-22 22:32:31 +02:00
5ea2b8afcf a first version of obisummary
Former-commit-id: cca1019d82a14a322f46a20890b996b5c7491d41
2023-11-09 22:33:06 +02:00
d23a911080 Change the way sequence definition are managed. They are now when present stored as an attribute
Former-commit-id: 6e618377c05b42937d2eace3c9668390980ab68c
2023-10-05 07:21:12 +02:00
3f8c0d6a2f Replace MakeBioSequence call by NewBioSequence call,
Implements a new file format guesser
Adds some more API doc


Former-commit-id: 9837bf1c28beca6ddb599b367f93548950ba83c1
2023-08-30 19:59:46 +02:00
9bf006af93 A first prototype for the space of sequences
Former-commit-id: 07dc6ef044b5b6a6fb45dc2acb01dffe71a96195
2023-08-27 14:58:55 +02:00
d5e84ec676 rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
2023-03-24 10:25:12 +07:00