16 Commits

Author	SHA1	Message	Date
Eric Coissac	5a3705b6bb	Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.	2025-03-25 16:44:46 +01:00
Eric Coissac	795df34d1a	Changes to be committed: ... modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go	2024-12-19 13:36:59 +01:00
Eric Coissac	00b0edc15a	refactoring of the file chunck writing	2024-11-29 18:15:03 +01:00
Eric Coissac	03f4e88a17	Fisrt functional version	2024-11-14 19:10:23 +01:00
Eric Coissac	65ae82622e	correction of several small bugs	2024-09-03 06:08:07 -03:00
Eric Coissac	67665a6b40	Xprize update ... Former-commit-id: d38919a897961e4d40da3b844057c3fb94fdb6d7	2024-07-25 18:09:03 -04:00
Eric Coissac	bd855c4965	Adds CSV as an input format ... Former-commit-id: a365bb6947064adc2709d66df05fa54c6fe47fad	2024-07-03 21:04:27 +02:00
Eric Coissac	fd663357b5	First version of obicleandb... ... Former-commit-id: e60b61d015abbf029a555b51de99b4252c50ab59	2024-07-01 17:12:42 +02:00
Eric Coissac	8d77cc4133	Change path of the obitools pkg ... Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65	2023-11-29 12:14:37 +01:00
Eric Coissac	5ea2b8afcf	a first version of obisummary ... Former-commit-id: cca1019d82a14a322f46a20890b996b5c7491d41	2023-11-09 22:33:06 +02:00
Eric Coissac	61c30f9b6a	Patch rev complement and first implementation of --auto in obicsv ... Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764	2023-11-07 09:37:07 +02:00
Eric Coissac	9bf006af93	A first prototype for the space of sequences ... Former-commit-id: 07dc6ef044b5b6a6fb45dc2acb01dffe71a96195	2023-08-27 14:58:55 +02:00
Eric Coissac	d46f6b06c5	several small changes ... Former-commit-id: c1cdb95885e44fd6ee7d1c963860d7ab41230c96	2023-06-07 17:50:10 +02:00
Eric Coissac	d5e84ec676	rename goutils to obiutils ... Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5	2023-03-24 10:25:12 +07:00
Eric Coissac	d88de15cdc	Refactoring codes for removing buffer size options. An some other changes... ... Former-commit-id: 10b57cc1a27446ade3c444217341e9651e89cdce	2023-03-07 11:12:13 +07:00
Eric Coissac	f97f92df72	rename the iterator class	2023-01-22 22:04:17 +01:00