6 Commits

Author	SHA1	Message	Date
Eric Coissac	5a3705b6bb	Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands.	2025-03-25 16:44:46 +01:00
Eric Coissac	51b3e83d32	some cleaning	2025-02-24 11:31:49 +01:00
Eric Coissac	6a8061cc4f	Add managment of the taxonomy alias politic	2025-02-10 14:05:47 +01:00
Eric Coissac	0df082da06	Adds possibility to extract a taxonomy from taxonomic path included in sequence files	2025-01-30 11:18:21 +01:00
Eric Coissac	795df34d1a	Changes to be committed: ... modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go	2024-12-19 13:36:59 +01:00
Eric Coissac	03f4e88a17	Fisrt functional version	2024-11-14 19:10:23 +01:00