|
|
b4afd784dc
|
few small correction
Former-commit-id: 9319387ef5379b66e008233dbd7b6ea60b5d3b1e
|
2024-03-06 12:52:22 -03:00 |
|
|
|
7bd073ccd4
|
First version of obisplit and patch a bug in the new workers API
Former-commit-id: f28af9f104c08d68e29fd866739d8dd58241da63
|
2024-03-03 11:16:24 -04:00 |
|
|
|
0f3871d203
|
Change the API of workers
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
|
2024-03-02 16:03:46 -04:00 |
|
|
|
4a0b20484f
|
Add the --taxonomic-path option to obiannotate
Former-commit-id: 385309a1c4bc5ed33aeaafc63eedb9fc552f78a6
|
2024-02-27 20:10:26 +01:00 |
|
|
|
4127ddb26f
|
.gitignore
Former-commit-id: e1dcb41970f7a5405005cda8a1bbd90798e8020d
|
2024-02-27 07:29:14 +01:00 |
|
|
|
c9fe6f6ebf
|
Make some correction on genbank/embl parser
Former-commit-id: fb2ebb351f61d78432bb9648d0a509b6557651a2
|
2024-02-27 07:28:56 +01:00 |
|
|
|
38c49e9f38
|
Switch GOPATH to the local directory in Makefile
Former-commit-id: ae00f1136021e6fcd5047aadb4762653cf003d5d
|
2024-02-27 07:22:57 +01:00 |
|
|
|
1542ce4c63
|
Work on EMBL and Genbank parser efficienct
Former-commit-id: 309cc9ce4eea4c8085d7d4451a66a81710532f07
|
2024-02-20 13:23:07 +01:00 |
|
|
|
95caebec8f
|
update modules
Former-commit-id: 04651744d21f0db3406a0aa7bb9cdf9729140349
|
2024-02-16 18:12:59 +01:00 |
|
|
|
c1d9bea6bb
|
Release 4.1.2
Former-commit-id: 68a0f5c50b7a33e31b76c0c0994e17dc8321963b
|
2024-02-16 18:05:08 +01:00 |
|
|
|
54ec09037e
|
Patch a genbank & embl parsing error.
Former-commit-id: 060e80f42d176e6982e63d1128993fbcb4ad395f
|
2024-02-16 15:20:37 +01:00 |
|
|
|
69b4d9ed20
|
Patch e bug in the ngsfilter library when match with indel are at the extremities
Former-commit-id: 5a8a3100ac4b3eca104644597abe599eb7f2a5f4
|
2024-02-01 09:54:34 +01:00 |
|
|
|
6cc5c44a32
|
Correct the bug in embl reader
Former-commit-id: 579d397ca16e8c4cf2f8ba01e503e62b2fffa06f
|
2024-01-31 15:50:14 +01:00 |
|
|
|
23758b00f6
|
Patch a bug in the embl reader and adds some doc
Former-commit-id: 9b5f75fb14bcc3043da1647055279987a295d271
|
2024-01-31 15:43:02 +01:00 |
|
|
|
f2f7b4574e
|
update the geometric obitag
Former-commit-id: acd8fe1c8c1cf443098432d818397b0b5d02df33
|
2024-01-17 23:38:51 +01:00 |
|
|
|
13cfebd737
|
some more cleaning
Former-commit-id: e96df5e82929ceece14b0625dc5ad1ebc59899b7
|
2024-01-16 21:11:38 +01:00 |
|
|
|
3c48bafab0
|
patch a low level bug in EnsureCapacity
Former-commit-id: 2d50dc6923e7cfca9b864fb885577c1d1f936fc1
|
2024-01-16 20:51:45 +01:00 |
|
|
|
6fca03227a
|
Archive cleaning
Former-commit-id: ded6d9cb43e3ecdf6eb6965e73580ce30ab986c5
|
2024-01-04 14:27:33 +01:00 |
|
|
|
5b57139450
|
Reduce doc size
Former-commit-id: 6f92f375e9cf92159e769ce562071bb56a871819
|
2024-01-04 14:17:44 +01:00 |
|
|
|
74854fa65c
|
remove bade files
Former-commit-id: cc6c11243d25d1a9ba5acea301dd91e31f996b77
|
2024-01-04 09:11:00 +01:00 |
|
|
|
344de1d494
|
remove bad files
Former-commit-id: df4c80c51173d7e3f7a7d7f647ca8613c330c958
|
2024-01-04 09:09:26 +01:00 |
|
|
|
ff54ef93d8
|
remove bad files
Former-commit-id: 44bd45070e43c60ff37a7c579ca4ae1517ec7bcc
|
2024-01-04 09:05:44 +01:00 |
|
|
|
43728146bb
|
remove bad files
Former-commit-id: bb9eefd13801477ea78f1da1c5e145f6c8c8186a
|
2024-01-04 09:04:12 +01:00 |
|
|
|
0a62e39ee0
|
remove wrongly pushed files
Former-commit-id: 165c8984ae88893ccf181e158aaacb218dcda752
|
2024-01-04 09:00:21 +01:00 |
|
|
|
e3938c7ba0
|
Update release date
Former-commit-id: 773ca2e8938c10cdf24911598d56708a5a80fbc2
|
2023-12-20 10:06:17 +01:00 |
|
|
|
1a0ca8c847
|
Tags release 4.1.1
Former-commit-id: 31c11305f9301615bdc1c9dfd0c7270777b6a096
|
2023-12-20 10:02:40 +01:00 |
|
|
|
a36e830de3
|
homogenize worker count
Former-commit-id: 4352ac6694c08023cdf0e090723fac8af655cea4
|
2023-12-20 08:14:07 +01:00 |
|
|
|
7a31d5b07b
|
Adds some more error controle on taxonomy reading
Former-commit-id: 29c9eafd8c32a92d30611094b06e600aff2e09c6
|
2023-12-14 09:17:46 +01:00 |
|
|
|
b9a7961c91
|
Add more error checks on taxonomy reading
Former-commit-id: 30c848d8e61214afcc7d92f0d3a3f5a1474fc720
|
2023-12-14 08:09:06 +01:00 |
|
|
|
2caaa62485
|
Implements the kmeans++ algo to select the landmarks in the geometric method
Former-commit-id: 732404a0dc6d7276e4e479dd2481aa4bd42d4ce5
|
2023-12-11 16:07:03 +01:00 |
|
|
|
37c3e16d5d
|
Adds the option --pairing-scale to obipairing
Former-commit-id: c60416708467f5e818e70e08b3c512014b6212f0
|
2023-12-07 12:28:16 +01:00 |
|
|
|
008f33aee4
|
Adds a better detection of invalid format of ngsfilter files
Former-commit-id: 2d3c4709264b822f2750a7a159a01700ec0bf6ed
|
2023-12-07 10:47:34 +01:00 |
|
|
|
0f8066d367
|
many changes ;-)
Former-commit-id: cb4aea844e960e4af4dc673ebc8eec49a7d12b13
|
2023-12-05 15:28:29 +01:00 |
|
|
|
03bef6461d
|
Complement to the documentation
Former-commit-id: 89952a6f3bb261a6aaec24430906e635914ffce4
|
2023-12-04 13:16:34 +01:00 |
|
|
|
eb351a7530
|
patch bug in worker
Former-commit-id: f83cc62fc7a85f732e871f8866f80f738f494f9e
|
2023-12-03 22:44:13 +01:00 |
|
|
|
d29f82a28d
|
Update kmeans.go
Former-commit-id: 910a94ea5a5a0514a30ff3549c4cf71c13d4577b
|
2023-12-01 16:45:47 +01:00 |
|
|
|
5682247ff8
|
Update main.go
Former-commit-id: f2aec0d30c0d2b31a9d00c7d4adf47421123b0fb
|
2023-12-01 16:42:12 +01:00 |
|
|
|
71bb5f3f89
|
Update options.go
Former-commit-id: b794cb924596b069b13ac07de3291ba640289d7a
|
2023-12-01 16:38:02 +01:00 |
|
|
|
a0d77d8a60
|
Update obilandmark.go
Former-commit-id: 6cb6da988fa8a0f87025f4da36173cfc4131e056
|
2023-12-01 16:37:32 +01:00 |
|
|
|
e7481f8f0f
|
patch for impot bug
Former-commit-id: f01546fabfbd603519c0fcf3225c63fa5a134e99
|
2023-12-01 16:31:35 +01:00 |
|
|
|
82040dbe55
|
Patch a bug leading to loose taxonomical identification (set to root) when best_id = 1
Former-commit-id: 8eb4f95d4df774563f5a5fe17d2c9c8836361caa
|
2023-11-30 13:07:51 +01:00 |
|
|
|
8d77cc4133
|
Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
|
2023-11-29 12:14:37 +01:00 |
|
|
|
72ad84c2d4
|
remove a forgotten debug log
Former-commit-id: 9fe06483b0dabc9d618f4f1d752ae9e472a07904
|
2023-11-25 14:04:22 +01:00 |
|
|
|
db6de58548
|
Patch bug in ngsfilter reader
Former-commit-id: 77a1c39bf9c023bf4a3f58167e1e8a4d5d82e7c9
|
2023-11-25 13:55:43 +01:00 |
|
|
|
5d24522aa6
|
update the release notes
Former-commit-id: 71ffb326302e5f108a52a41853e1c7dc6ee76136
|
2023-11-24 17:45:13 +01:00 |
|
|
|
b556e045e5
|
Adds option to tune the pairing of the sequences in obipairing and some stats to the results
Former-commit-id: a6cf9cb4d4ab20a433a2534fd7d11cd3ca8ebbaa
|
2023-11-24 12:29:37 +01:00 |
|
|
|
ec31ae86b9
|
Adds some stats in obiparing about fast align results
Former-commit-id: 44f6d6538e759dd7dc1db068a812957f6b20f50d
|
2023-11-24 10:57:10 +01:00 |
|
|
|
ce66b0af2f
|
Patch a bug in the pair-end alignement in case of equality between scores.
Former-commit-id: bbdb761a98b76f2421d1f0a72960e72b13b6e626
|
2023-11-24 09:59:29 +01:00 |
|
|
|
72e5855ee9
|
Adds changes
Former-commit-id: 85e9faa305c918618cef5d8ea5e2eca8956213d4
|
2023-11-22 14:58:21 +01:00 |
|
|
|
6141d404cd
|
patch a bug related to --count option of obicsv
Former-commit-id: e19e8cc12a99216d24c5e0c5350c273202d84de4
|
2023-11-22 14:51:56 +01:00 |
|
