Commit Graph

14 Commits

Author SHA1 Message Date
7c4042df6b introduce obidefault 2025-01-27 17:12:45 +01:00
1b1cd41fd3 Add some code refactoring from the blackboard branch 2024-08-02 12:35:46 +02:00
54a138196c Patch a bug in fasta and fastq reading
Former-commit-id: bcaa264b4c4a7c67617eb909b199176bf09913db
2024-06-21 14:28:57 +02:00
8f08959ebb Make the --no-progressbar option effective on graph building progress too.
Former-commit-id: 3fabecfc9de69ad406d6840c8f821c16eebaef46
2024-04-22 12:01:43 +02:00
0f3871d203 Change the API of workers
Former-commit-id: 9b07306edd8cf28266f86f95823948fa99d39ea9
2024-03-02 16:03:46 -04:00
8d77cc4133 Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
7b7128196a small refactoring including doc
Former-commit-id: 6d6b527d89d77aa571831f7500f841840e280536
2023-08-27 15:52:28 +02:00
be47ec909c add the --skip-empty option
Former-commit-id: ec9cb0ecaf90a61bf9289cf4c089b5cc2fcb65a5
2023-07-17 14:24:02 +02:00
d5e84ec676 rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
2023-03-24 10:25:12 +07:00
f97f92df72 rename the iterator class 2023-01-22 22:04:17 +01:00
20b16c0ba1 Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
2022-11-22 15:06:09 +01:00
57ba460929 add the obi_mutation attribute to the sequences 2022-09-20 22:03:44 +02:00
6b8f4490cf Change obiclean algorithm for a better evaluation of ratio 2022-08-31 20:38:03 +02:00
5dd835d3e7 A first functional version of obiclean 2022-08-20 18:01:07 +02:00