Commit Graph

13 Commits

Author SHA1 Message Date
3f8c0d6a2f Replace MakeBioSequence call by NewBioSequence call,
Implements a new file format guesser
Adds some more API doc


Former-commit-id: 9837bf1c28beca6ddb599b367f93548950ba83c1
2023-08-30 19:59:46 +02:00
8895381c92 Correct a bug when sequence length is shorter than kmer size in debruijngraph
Former-commit-id: 56cd670d24065d8774abdcbf685ff4a13e7c4132
2023-06-07 17:43:32 +02:00
e9dcacbf24 Correction of one base deletion in the consensus
Former-commit-id: 6aabd8bfdb5263a2285718cb2eca27628c0e717c
2023-04-19 09:12:12 +02:00
21819cd41e Add some geometry data to the GML edges
Former-commit-id: 81022c8b6916819e5351026ebabe9641856cc06d
2023-03-28 11:43:46 +07:00
e8a8f746d3 few bug in the graph algorithm
Former-commit-id: b61bdd9f671e2f5e90d32c1beac1ed84efa5e05c
2023-03-27 22:43:45 +07:00
a33e471b39 First attempt for obiconsensus... The graph traversing algorithm is too simple
Former-commit-id: 0456e6c7fd55d6d0fcf9856c40386b976b912cba
2023-03-27 19:51:10 +07:00
d5e84ec676 rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
2023-03-24 10:25:12 +07:00
4117cbdd08 Stabilize the obipairing output. whant run twice on the same dataset results are identical 2023-02-05 11:06:31 +01:00
29563aa94e Rename the Length methods Len to follow GO standart 2022-11-17 11:09:58 +01:00
8aa323dad5 Add a first version of obitag the successor of ecotag 2022-10-26 13:16:56 +02:00
2e7c1834b0 Big change iin the data model, and a first version of obiuniq 2022-02-21 19:00:23 +01:00
b9b9c0f179 Patch module name from oa2 to obitools 2022-01-13 23:43:01 +01:00
f53bf1b804 First commit 2022-01-13 23:27:39 +01:00