References

Boyer, Frédéric, Céline Mercier, Aurélie Bonin, Yvan Le Bras, Pierre Taberlet, and Eric Coissac. 2016. “obitools: a unix-inspired software package for DNA metabarcoding.” Molecular Ecology Resources 16 (1): 176–82. https://doi.org/10.1111/1755-0998.12428.

Cock, Peter JA, Christopher J Fields, Naohisa Goto, Michael L Heuer, and Peter M Rice. 2010. “The Sanger FASTQ File Format for Sequences with Quality Scores, and the Solexa/Illumina FASTQ Variants.” Nucleic Acids Research 38 (6): 1767–71.

Lipman, D J, and W R Pearson. 1985. “Rapid and sensitive protein similarity searches.” Science 227 (4693): 1435–41. http://www.ncbi.nlm.nih.gov/pubmed/2983426.

Riaz, Tiayyba, Wasim Shehzad, Alain Viari, François Pompanon, Pierre Taberlet, and Eric Coissac. 2011. “ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.” Nucleic Acids Research 39 (21): e145. https://doi.org/10.1093/nar/gkr732.

Seguritan, V, and F Rohwer. 2001. “FastGroup: a program to dereplicate libraries of 16S rDNA sequences.” BMC Bioinformatics 2 (October): 9. https://doi.org/10.1186/1471-2105-2-9.

Shehzad, Wasim, Tiayyba Riaz, Muhammad A Nawaz, Christian Miquel, Carole Poillot, Safdar A Shah, Francois Pompanon, Eric Coissac, and Pierre Taberlet. 2012. “Carnivore diet analysis based on next-generation sequencing: Application to the leopard cat (Prionailurus bengalensis) in Pakistan.” Molecular Ecology 21 (8): 1951–65. https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-294X.2011.05424.x.