Eric Coissac 03f4e88a17 Fisrt functional version

2024-11-14 19:10:23 +01:00

..

kseq

some more cleaning

2024-01-16 21:11:38 +01:00

ncbitaxdump

Fisrt functional version

2024-11-14 19:10:23 +01:00

batch_of_files_reader.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

batch_reader_type.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

csv_read.go

Add some code refactoring from the blackboard branch

2024-08-02 12:35:46 +02:00

csv_writer.go

Fisrt functional version

2024-11-14 19:10:23 +01:00

dispatcher.go

Switch to faster json library go-json and sonic

2024-06-23 00:36:08 +02:00

ecopcr_read.go

Add some code refactoring from the blackboard branch

2024-08-02 12:35:46 +02:00

embl_read.go

Adjust the size of the genbank and embl buffer size

2024-08-05 11:32:37 +02:00

empty_file.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastaseq_read.go

Optimize memory for readers and writers

2024-08-05 10:48:28 +02:00

fastqseq_read.go

Patch a bug in fastq reader

2024-10-20 16:07:43 +02:00

fastqseq_write_generic.go

patch for impot bug

2023-12-01 16:31:35 +01:00

fastseq_header.go

Change the API of workers

2024-03-02 16:03:46 -04:00

fastseq_interface.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastseq_json_header.go

Reducing memory allocation events

2024-06-22 22:32:31 +02:00

fastseq_obi_header.go

Reducing memory allocation events

2024-06-22 22:32:31 +02:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

Add some code refactoring from the blackboard branch

2024-08-02 12:35:46 +02:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Patch a bug on writing to stdout, and add clearer error on openning data files

2024-08-13 09:45:28 +02:00

fastseq_write_fastq.go

Patch a bug on writing to stdout, and add clearer error on openning data files

2024-08-13 09:45:28 +02:00

fastseq_write_with_index.go

many changes ;-)

2023-12-05 15:28:29 +01:00

genbank_read.go

Adjust the size of the genbank and embl buffer size

2024-08-05 11:32:37 +02:00

json_writer.go

Add some code refactoring from the blackboard branch

2024-08-02 12:35:46 +02:00

ngsfilter_read.go

In obimultiplex, patch a bug when no tag are associated to a primer.

2024-10-22 14:12:20 +02:00

options.go

Add some code refactoring from the blackboard branch

2024-08-02 12:35:46 +02:00

seqfile_chunk_read.go

Patch a bug in fastq reader

2024-10-20 16:07:43 +02:00

seqfile_chunk_write.go

Patch a bug on writing to stdout, and add clearer error on openning data files

2024-08-13 09:45:28 +02:00

universal_read.go

Add option related to agrep match on obigrep and obiannotate

2024-09-09 16:52:13 +02:00

universal_write.go

Patch a bug on writing to stdout, and add clearer error on openning data files

2024-08-13 09:45:28 +02:00

xopen_test.go

Patch a bug in the pair-end alignement in case of equality between scores.

2023-11-24 09:59:29 +01:00

xopen.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00