mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
43 lines
998 B
Go
43 lines
998 B
Go
package main
|
|
|
|
import (
|
|
"os"
|
|
"runtime/pprof"
|
|
|
|
log "github.com/sirupsen/logrus"
|
|
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq"
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
|
|
"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obigrep"
|
|
)
|
|
|
|
func main() {
|
|
|
|
defer obiseq.LogBioSeqStatus()
|
|
|
|
// go tool pprof -http=":8000" ./obipairing ./cpu.pprof
|
|
f, err := os.Create("cpu.pprof")
|
|
if err != nil {
|
|
log.Fatal(err)
|
|
}
|
|
pprof.StartCPUProfile(f)
|
|
defer pprof.StopCPUProfile()
|
|
|
|
// go tool trace cpu.trace
|
|
// ftrace, err := os.Create("cpu.trace")
|
|
// if err != nil {
|
|
// log.Fatal(err)
|
|
// }
|
|
// trace.Start(ftrace)
|
|
// defer trace.Stop()
|
|
|
|
optionParser := obioptions.GenerateOptionParser(obigrep.OptionSet)
|
|
|
|
_, args, _ := optionParser(os.Args)
|
|
|
|
sequences, _ := obiconvert.ReadBioSequences(args...)
|
|
selected := obigrep.IFilterSequence(sequences)
|
|
obiconvert.WriteBioSequences(selected, true)
|
|
}
|