mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
30 lines
734 B
Go
30 lines
734 B
Go
package main
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import (
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"os"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obicleandb"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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)
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func main() {
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obioptions.SetBatchSize(10)
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optionParser := obioptions.GenerateOptionParser(obicleandb.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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obiconvert.OpenSequenceDataErrorMessage(args, err)
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cleaned := obicleandb.ICleanDB(fs)
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toconsume, _ := obiconvert.CLIWriteBioSequences(cleaned, false)
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toconsume.Consume()
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obiiter.WaitForLastPipe()
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}
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