mirror of
https://github.com/metabarcoding/obitools4.git
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28 lines
596 B
C
28 lines
596 B
C
#include <zlib.h>
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#include <stdio.h>
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#include "kseq.h"
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KSEQ_INIT(gzFile, gzread)
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int main(int argc, char *argv[])
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{
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gzFile fp;
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kseq_t *seq;
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int l;
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if (argc == 1) {
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fprintf(stderr, "Usage: %s <in.seq>\n", argv[0]);
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return 1;
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}
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fp = gzopen(argv[1], "r");
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seq = kseq_init(fp);
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while ((l = kseq_read(seq)) >= 0) {
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printf("name: %s\n", seq->name.s);
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if (seq->comment.l) printf("comment: %s\n", seq->comment.s);
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printf("seq: %s\n", seq->seq.s);
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if (seq->qual.l) printf("qual: %s\n", seq->qual.s);
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}
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printf("return value: %d\n", l);
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kseq_destroy(seq);
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gzclose(fp);
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return 0;
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}
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