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https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
65 lines
1.5 KiB
Go
65 lines
1.5 KiB
Go
package obitax
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import (
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiutils"
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log "github.com/sirupsen/logrus"
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)
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func (taxonomy *Taxonomy) MakeSetTaxonAtRankWorker(rank string) obiseq.SeqWorker {
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if !obiutils.Contains(taxonomy.RankList(), rank) {
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log.Fatalf("%s is not a valid rank (allowed ranks are %v)",
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rank,
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taxonomy.RankList())
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}
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w := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
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taxonomy.SetTaxonAtRank(sequence, rank)
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return obiseq.BioSequenceSlice{sequence}, nil
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}
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return w
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}
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func (taxonomy *Taxonomy) MakeSetSpeciesWorker() obiseq.SeqWorker {
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w := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
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taxonomy.SetSpecies(sequence)
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return obiseq.BioSequenceSlice{sequence}, nil
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}
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return w
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}
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func (taxonomy *Taxonomy) MakeSetGenusWorker() obiseq.SeqWorker {
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w := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
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taxonomy.SetGenus(sequence)
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return obiseq.BioSequenceSlice{sequence}, nil
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}
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return w
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}
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func (taxonomy *Taxonomy) MakeSetFamilyWorker() obiseq.SeqWorker {
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w := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
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taxonomy.SetFamily(sequence)
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return obiseq.BioSequenceSlice{sequence}, nil
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}
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return w
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}
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func (taxonomy *Taxonomy) MakeSetPathWorker() obiseq.SeqWorker {
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w := func(sequence *obiseq.BioSequence) (obiseq.BioSequenceSlice, error) {
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taxonomy.SetPath(sequence)
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return obiseq.BioSequenceSlice{sequence}, nil
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}
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return w
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}
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