obitools4/extract_taxonomy.go at 6cb7a5a3529c7e967e628f32d0f739ec72c168e1 - obitools4 - Gitea: Git with a cup of tea

obitools/obitools4

mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00

Files

Eric Coissac 6cb7a5a352 Changes to be committed:

modified:   cmd/obitools/obitag/main.go
	modified:   cmd/obitools/obitaxonomy/main.go
	modified:   pkg/obiformats/csvtaxdump_read.go
	modified:   pkg/obiformats/ecopcr_read.go
	modified:   pkg/obiformats/ncbitaxdump_read.go
	modified:   pkg/obiformats/ncbitaxdump_readtar.go
	modified:   pkg/obiformats/newick_write.go
	modified:   pkg/obiformats/options.go
	modified:   pkg/obiformats/taxonomy_read.go
	modified:   pkg/obiformats/universal_read.go
	modified:   pkg/obiiter/extract_taxonomy.go
	modified:   pkg/obioptions/options.go
	modified:   pkg/obioptions/version.go
	new file:   pkg/obiphylo/tree.go
	modified:   pkg/obiseq/biosequenceslice.go
	modified:   pkg/obiseq/taxonomy_methods.go
	modified:   pkg/obitax/taxonomy.go
	modified:   pkg/obitax/taxonset.go
	modified:   pkg/obitools/obiconvert/sequence_reader.go
	modified:   pkg/obitools/obitag/obitag.go
	modified:   pkg/obitools/obitaxonomy/obitaxonomy.go
	modified:   pkg/obitools/obitaxonomy/options.go
	deleted:    sample/.DS_Store

2025-06-04 09:48:10 +02:00

19 lines

359 B

Go

Raw Blame History

 package obiiter
 import "git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitax"
 func (iterator *IBioSequence) ExtractTaxonomy(seqAsTaxa bool) (taxonomy *obitax.Taxonomy, err error) {
 	for iterator.Next() {
 		slice := iterator.Get().Slice()
 		taxonomy, err = slice.ExtractTaxonomy(taxonomy, seqAsTaxa)
 		if err != nil {
 			return
 		}
 	}
 	return
 }