obitools4

mirror of https://github.com/metabarcoding/obitools4.git synced 2025-06-29 16:20:46 +00:00

Files

Eric Coissac 6cb7a5a352 Changes to be committed:

modified:   cmd/obitools/obitag/main.go
	modified:   cmd/obitools/obitaxonomy/main.go
	modified:   pkg/obiformats/csvtaxdump_read.go
	modified:   pkg/obiformats/ecopcr_read.go
	modified:   pkg/obiformats/ncbitaxdump_read.go
	modified:   pkg/obiformats/ncbitaxdump_readtar.go
	modified:   pkg/obiformats/newick_write.go
	modified:   pkg/obiformats/options.go
	modified:   pkg/obiformats/taxonomy_read.go
	modified:   pkg/obiformats/universal_read.go
	modified:   pkg/obiiter/extract_taxonomy.go
	modified:   pkg/obioptions/options.go
	modified:   pkg/obioptions/version.go
	new file:   pkg/obiphylo/tree.go
	modified:   pkg/obiseq/biosequenceslice.go
	modified:   pkg/obiseq/taxonomy_methods.go
	modified:   pkg/obitax/taxonomy.go
	modified:   pkg/obitax/taxonset.go
	modified:   pkg/obitools/obiconvert/sequence_reader.go
	modified:   pkg/obitools/obitag/obitag.go
	modified:   pkg/obitools/obitaxonomy/obitaxonomy.go
	modified:   pkg/obitools/obitaxonomy/options.go
	deleted:    sample/.DS_Store

2025-06-04 09:48:10 +02:00

default_taxonomy.go

Make sequence files recognized as a taxonomy

2025-03-14 14:22:22 +01:00

filter_on_name.go

a functional new version of obifind

2024-11-24 19:33:24 +01:00

filter_on_rank.go

update api documentation

2024-11-16 05:59:41 +01:00

filter_on_subclade_of.go

update api documentation