Eric Coissac 87a7219ab4 Adds the reading of the options through the csv formated ngsfilter configuration file ...

Former-commit-id: 0e9a13689da2ba45293c7de1f728d3d0d34d3238

2024-06-04 22:57:07 +02:00

..

kseq

some more cleaning

2024-01-16 21:11:38 +01:00

ncbitaxdump

Adds some more error controle on taxonomy reading

2023-12-14 09:17:46 +01:00

batch_of_files_reader.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

batch_reader_type.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

csv_writer.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

dispatcher.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

ecopcr_read.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

embl_read.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

empty_file.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastaseq_read.go

Correct a bug in the fastq reader affecting the quality of the last record of each chunk

2024-06-04 11:57:16 +02:00

fastqseq_read.go

Correct a bug in the fastq reader affecting the quality of the last record of each chunk

2024-06-04 11:57:16 +02:00

fastqseq_write_generic.go

patch for impot bug

2023-12-01 16:31:35 +01:00

fastseq_header.go

Change the API of workers

2024-03-02 16:03:46 -04:00

fastseq_interface.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastseq_json_header.go

Patch a tricky bug in parsing of json header and save the last sequence from files

2024-06-04 13:46:23 +02:00

fastseq_obi_header.go

Patch a tricky bug in parsing of json header and save the last sequence from files

2024-06-04 13:46:23 +02:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

fastseq_write_fastq.go

Plenty of small bugs

2024-06-04 16:49:12 +02:00

fastseq_write_with_index.go

many changes ;-)

2023-12-05 15:28:29 +01:00

genbank_read.go

Refactor sequence file reading

2024-05-01 00:50:23 +02:00

json_writer.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

ngsfilter_read.go

Adds the reading of the options through the csv formated ngsfilter configuration file

2024-06-04 22:57:07 +02:00

options.go

Update of obipcr and homogenization of logging

2024-05-16 15:18:30 +02:00

seqfile_chunck_read.go

Patch a tricky bug in parsing of json header and save the last sequence from files

2024-06-04 13:46:23 +02:00

universal_read.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

universal_write.go

Change path of the obitools pkg

2023-11-29 12:14:37 +01:00

xopen_test.go

Patch a bug in the pair-end alignement in case of equality between scores.

2023-11-24 09:59:29 +01:00

xopen.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00