mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
359 lines
16 KiB
Plaintext
359 lines
16 KiB
Plaintext
--**************************************************************************
|
|
-- This is the NCBI genetic code table
|
|
-- Initial base data set from Andrzej Elzanowski while at PIR International
|
|
-- Addition of Eubacterial and Alternative Yeast by J.Ostell at NCBI
|
|
-- Base 1-3 of each codon have been added as comments to facilitate
|
|
-- readability at the suggestion of Peter Rice, EMBL
|
|
-- Later additions by Taxonomy Group staff at NCBI
|
|
--
|
|
-- Version 4.6
|
|
-- Renamed genetic code 24 to Rhabdopleuridae Mitochondrial
|
|
--
|
|
-- Version 4.5
|
|
-- Added Cephalodiscidae mitochondrial genetic code 33
|
|
--
|
|
-- Version 4.4
|
|
-- Added GTG as start codon for genetic code 3
|
|
-- Added Balanophoraceae plastid genetic code 32
|
|
--
|
|
-- Version 4.3
|
|
-- Change to CTG -> Leu in genetic codes 27, 28, 29, 30
|
|
--
|
|
-- Version 4.2
|
|
-- Added Karyorelict nuclear genetic code 27
|
|
-- Added Condylostoma nuclear genetic code 28
|
|
-- Added Mesodinium nuclear genetic code 29
|
|
-- Added Peritrich nuclear genetic code 30
|
|
-- Added Blastocrithidia nuclear genetic code 31
|
|
--
|
|
-- Version 4.1
|
|
-- Added Pachysolen tannophilus nuclear genetic code 26
|
|
--
|
|
-- Version 4.0
|
|
-- Updated version to reflect numerous undocumented changes:
|
|
-- Corrected start codons for genetic code 25
|
|
-- Name of new genetic code is Candidate Division SR1 and Gracilibacteria
|
|
-- Added candidate division SR1 nuclear genetic code 25
|
|
-- Added GTG as start codon for genetic code 24
|
|
-- Corrected Pterobranchia Mitochondrial genetic code (24)
|
|
-- Added genetic code 24, Pterobranchia Mitochondrial
|
|
-- Genetic code 11 is now Bacterial, Archaeal and Plant Plastid
|
|
-- Fixed capitalization of mitochondrial in codes 22 and 23
|
|
-- Added GTG, ATA, and TTG as alternative start codons to code 13
|
|
--
|
|
-- Version 3.9
|
|
-- Code 14 differs from code 9 only by translating UAA to Tyr rather than
|
|
-- STOP. A recent study (Telford et al, 2000) has found no evidence that
|
|
-- the codon UAA codes for Tyr in the flatworms, but other opinions exist.
|
|
-- There are very few GenBank records that are translated with code 14,
|
|
-- but a test translation shows that retranslating these records with code
|
|
-- 9 can cause premature terminations. Therefore, GenBank will maintain
|
|
-- code 14 until further information becomes available.
|
|
--
|
|
-- Version 3.8
|
|
-- Added GTG start to Echinoderm mitochondrial code, code 9
|
|
--
|
|
-- Version 3.7
|
|
-- Added code 23 Thraustochytrium mitochondrial code
|
|
-- formerly OGMP code 93
|
|
-- submitted by Gertraude Berger, Ph.D.
|
|
--
|
|
-- Version 3.6
|
|
-- Added code 22 TAG-Leu, TCA-stop
|
|
-- found in mitochondrial DNA of Scenedesmus obliquus
|
|
-- submitted by Gertraude Berger, Ph.D.
|
|
-- Organelle Genome Megasequencing Program, Univ Montreal
|
|
--
|
|
-- Version 3.5
|
|
-- Added code 21, Trematode Mitochondrial
|
|
-- (as deduced from: Garey & Wolstenholme,1989; Ohama et al, 1990)
|
|
-- Added code 16, Chlorophycean Mitochondrial
|
|
-- (TAG can translated to Leucine instaed to STOP in chlorophyceans
|
|
-- and fungi)
|
|
--
|
|
-- Version 3.4
|
|
-- Added CTG,TTG as allowed alternate start codons in Standard code.
|
|
-- Prats et al. 1989, Hann et al. 1992
|
|
--
|
|
-- Version 3.3 - 10/13/95
|
|
-- Added alternate intiation codon ATC to code 5
|
|
-- based on complete mitochondrial genome of honeybee
|
|
-- Crozier and Crozier (1993)
|
|
--
|
|
-- Version 3.2 - 6/24/95
|
|
-- Code Comments
|
|
-- 10 Alternative Ciliate Macronuclear renamed to Euplotid Macro...
|
|
-- 15 Blepharisma Macro.. code added
|
|
-- 5 Invertebrate Mito.. GTG allowed as alternate initiator
|
|
-- 11 Eubacterial renamed to Bacterial as most alternate starts
|
|
-- have been found in Archea
|
|
--
|
|
--
|
|
-- Version 3.1 - 1995
|
|
-- Updated as per Andrzej Elzanowski at NCBI
|
|
-- Complete documentation in NCBI toolkit documentation
|
|
-- Note: 2 genetic codes have been deleted
|
|
--
|
|
-- Old id Use id - Notes
|
|
--
|
|
-- id 7 id 4 - Kinetoplast code now merged in code id 4
|
|
-- id 8 id 1 - all plant chloroplast differences due to RNA edit
|
|
--
|
|
--
|
|
--*************************************************************************
|
|
|
|
Genetic-code-table ::= {
|
|
{
|
|
name "Standard" ,
|
|
name "SGC0" ,
|
|
id 1 ,
|
|
ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**--*----M---------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Vertebrate Mitochondrial" ,
|
|
name "SGC1" ,
|
|
id 2 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSS**VVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**--------------------MMMM----------**---M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Yeast Mitochondrial" ,
|
|
name "SGC2" ,
|
|
id 3 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWTTTTPPPPHHQQRRRRIIMMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**----------------------MM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate
|
|
Mitochondrial; Mycoplasma; Spiroplasma" ,
|
|
name "SGC3" ,
|
|
id 4 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--MM------**-------M------------MMMM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Invertebrate Mitochondrial" ,
|
|
name "SGC4" ,
|
|
id 5 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSSSVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**--------------------MMMM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Ciliate Nuclear; Dasycladacean Nuclear; Hexamita Nuclear" ,
|
|
name "SGC5" ,
|
|
id 6 ,
|
|
ncbieaa "FFLLSSSSYYQQCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--------------*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Echinoderm Mitochondrial; Flatworm Mitochondrial" ,
|
|
name "SGC8" ,
|
|
id 9 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**-----------------------M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Euplotid Nuclear" ,
|
|
name "SGC9" ,
|
|
id 10 ,
|
|
ncbieaa "FFLLSSSSYY**CCCWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**-----------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Bacterial, Archaeal and Plant Plastid" ,
|
|
id 11 ,
|
|
ncbieaa "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**--*----M------------MMMM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Alternative Yeast Nuclear" ,
|
|
id 12 ,
|
|
ncbieaa "FFLLSSSSYY**CC*WLLLSPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**--*----M---------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Ascidian Mitochondrial" ,
|
|
id 13 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNKKSSGGVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**----------------------MM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
},
|
|
{
|
|
name "Alternative Flatworm Mitochondrial" ,
|
|
id 14 ,
|
|
ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
|
|
sncbieaa "-----------*-----------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Blepharisma Macronuclear" ,
|
|
id 15 ,
|
|
ncbieaa "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------*---*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Chlorophycean Mitochondrial" ,
|
|
id 16 ,
|
|
ncbieaa "FFLLSSSSYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------*---*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Trematode Mitochondrial" ,
|
|
id 21 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIMMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**-----------------------M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Scenedesmus obliquus Mitochondrial" ,
|
|
id 22 ,
|
|
ncbieaa "FFLLSS*SYY*LCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "------*---*---*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Thraustochytrium Mitochondrial" ,
|
|
id 23 ,
|
|
ncbieaa "FF*LSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--*-------**--*-----------------M--M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Rhabdopleuridae Mitochondrial" ,
|
|
id 24 ,
|
|
ncbieaa "FFLLSSSSYY**CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**-------M---------------M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Candidate Division SR1 and Gracilibacteria" ,
|
|
id 25 ,
|
|
ncbieaa "FFLLSSSSYY**CCGWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------**-----------------------M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Pachysolen tannophilus Nuclear" ,
|
|
id 26 ,
|
|
ncbieaa "FFLLSSSSYY**CC*WLLLAPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**--*----M---------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Karyorelict Nuclear" ,
|
|
id 27 ,
|
|
ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--------------*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Condylostoma Nuclear" ,
|
|
id 28 ,
|
|
ncbieaa "FFLLSSSSYYQQCCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**--*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Mesodinium Nuclear" ,
|
|
id 29 ,
|
|
ncbieaa "FFLLSSSSYYYYCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--------------*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Peritrich Nuclear" ,
|
|
id 30 ,
|
|
ncbieaa "FFLLSSSSYYEECC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "--------------*--------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Blastocrithidia Nuclear" ,
|
|
id 31 ,
|
|
ncbieaa "FFLLSSSSYYEECCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "----------**-----------------------M----------------------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Balanophoraceae Plastid" ,
|
|
id 32 ,
|
|
ncbieaa "FFLLSSSSYY*WCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M------*---*----M------------MMMM---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
} ,
|
|
{
|
|
name "Cephalodiscidae Mitochondrial" ,
|
|
id 33 ,
|
|
ncbieaa "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSSKVVVVAAAADDEEGGGG",
|
|
sncbieaa "---M-------*-------M---------------M---------------M------------"
|
|
-- Base1 TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
|
|
-- Base2 TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
|
|
-- Base3 TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
|
|
}
|
|
}
|