Eric Coissac db6de58548 Patch bug in ngsfilter reader ...

Former-commit-id: 77a1c39bf9c023bf4a3f58167e1e8a4d5d82e7c9

2023-11-25 13:55:43 +01:00

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kseq

First commit

2022-01-13 23:27:39 +01:00

ncbitaxdump

Rename the Length methods Len to follow GO standart

2022-11-17 11:09:58 +01:00

batch_of_files_reader.go

First attempt for obiconsensus... The graph traversing algorithm is too simple

2023-03-27 19:51:10 +07:00

batch_reader_type.go

rename the iterator class

2023-01-22 22:04:17 +01:00

csv_writer.go

First version of obimatrix

2023-11-12 20:40:56 +01:00

dispatcher.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

ecopcr_read.go

A go implementation of the fasta reader

2023-09-01 09:30:12 +02:00

embl_read.go

small changes

2023-11-07 21:20:45 +02:00

empty_file.go

Change the way sequence definition are managed. They are now when present stored as an attribute

2023-10-05 07:21:12 +02:00

fastaseq_read.go

Patch rev complement and first implementation of --auto in obicsv

2023-11-07 09:37:07 +02:00

fastqseq_read.go

Patch a bug in the fasq reader allowing to read only lower case sequence files

2023-11-10 09:10:54 +01:00

fastqseq_write_generic.go

Adds a JSON output format

2023-11-07 11:56:49 +02:00

fastseq_header.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

fastseq_interface.go

Big change iin the data model, and a first version of obiuniq

2022-02-21 19:00:23 +01:00

fastseq_json_header.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

fastseq_obi_header.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

Patch rev complement and first implementation of --auto in obicsv

2023-11-07 09:37:07 +02:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

fastseq_write_fastq.go

Patch rev complement and first implementation of --auto in obicsv

2023-11-07 09:37:07 +02:00

genbank_read.go

Correctly handle empty files

2023-10-16 15:34:06 +02:00

json_writer.go

Force json encoding to ascii

2023-11-07 12:10:14 +02:00

ngsfilter_read.go

Patch bug in ngsfilter reader

2023-11-25 13:55:43 +01:00

options.go

Patch rev complement and first implementation of --auto in obicsv

2023-11-07 09:37:07 +02:00

universal_read.go

Correctly handle empty files

2023-10-16 15:34:06 +02:00

universal_write.go

Patch the empty batch bug

2023-03-07 20:16:06 +07:00

xopen_test.go

Patch a bug in the pair-end alignement in case of equality between scores.

2023-11-24 09:59:29 +01:00

xopen.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00