mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
39 lines
716 B
Go
39 lines
716 B
Go
package main
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import (
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"os"
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log "github.com/sirupsen/logrus"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiiter"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obitools/obiconvert"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obioptions"
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)
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func main() {
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optionParser := obioptions.GenerateOptionParser(obiconvert.OptionSet)
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_, args := optionParser(os.Args)
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fs, err := obiconvert.CLIReadBioSequences(args...)
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if err != nil {
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log.Errorf("Cannot open file (%v)", err)
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os.Exit(1)
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}
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frags := obiiter.IFragments(
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1000,
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100,
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10,
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100,
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obioptions.CLIParallelWorkers(),
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)
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obiconvert.CLIWriteBioSequences(fs.Pipe(frags), true)
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obiiter.WaitForLastPipe()
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}
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