Eric Coissac e8c55a2b6b optimize sequence readers and patch a bug in the format guesser ...

Former-commit-id: 9dce1e96c57ae9a88c26fac5c8e1bdcdc2c0c7a5

2023-10-13 21:52:57 +02:00

..

kseq

First commit

2022-01-13 23:27:39 +01:00

ncbitaxdump

Rename the Length methods Len to follow GO standart

2022-11-17 11:09:58 +01:00

batch_of_files_reader.go

First attempt for obiconsensus... The graph traversing algorithm is too simple

2023-03-27 19:51:10 +07:00

batch_reader_type.go

rename the iterator class

2023-01-22 22:04:17 +01:00

csv_writer.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

dispatcher.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

ecopcr_read.go

A go implementation of the fasta reader

2023-09-01 09:30:12 +02:00

embl_read.go

optimize sequence readers and patch a bug in the format guesser

2023-10-13 21:52:57 +02:00

empty_file.go

Change the way sequence definition are managed. They are now when present stored as an attribute

2023-10-05 07:21:12 +02:00

fastaseq_read.go

optimize sequence readers and patch a bug in the format guesser

2023-10-13 21:52:57 +02:00

fastqseq_read.go

optimize sequence readers and patch a bug in the format guesser

2023-10-13 21:52:57 +02:00

fastseq_header.go

A small bug in logging and API documentation

2023-08-14 15:21:30 +02:00

fastseq_interface.go

Big change iin the data model, and a first version of obiuniq

2022-02-21 19:00:23 +01:00

fastseq_json_header.go

rename goutils to obiutils

2023-03-24 10:25:12 +07:00

fastseq_obi_header.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

fastseq_read.c

Patch reading of annotation from stdin

2022-09-29 14:48:05 +02:00

fastseq_read.go

A go implementation of the fasta reader

2023-09-01 09:30:12 +02:00

fastseq_read.h

First commit

2022-01-13 23:27:39 +01:00

fastseq_write_fasta.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

fastseq_write_fastq.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

genbank_read.go

A go implementation of the fasta reader

2023-09-01 09:30:12 +02:00

ngsfilter_read.go

Change the way sequence definition are managed. They are now when present stored as an attribute

2023-10-05 07:21:12 +02:00

options.go

A go implementation of the fasta reader

2023-09-01 09:30:12 +02:00

universal_read.go

optimize sequence readers and patch a bug in the format guesser

2023-10-13 21:52:57 +02:00

universal_write.go

Patch the empty batch bug

2023-03-07 20:16:06 +07:00

xopen_test.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00

xopen.go

Patch sequence writers to remove definition from header when json format is used.

2023-10-05 07:31:31 +02:00