mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
36 lines
754 B
Go
36 lines
754 B
Go
package main
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import (
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obifp"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obikmer"
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"git.metabarcoding.org/obitools/obitools4/obitools4/pkg/obiseq"
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log "github.com/sirupsen/logrus"
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)
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func main() {
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one := obifp.OneUint[obifp.Uint128]()
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a, b := obifp.OneUint[obifp.Uint64]().LeftShift64(66, 0)
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log.Infof("one: %v, %v", a, b)
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shift := one.LeftShift(66)
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log.Infof("one: %v", shift)
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seq := obiseq.NewBioSequence("test", []byte("atcgggttccaacc"), "")
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kmermap := obikmer.NewKmerMap[obifp.Uint128](
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obiseq.BioSequenceSlice{
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seq,
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},
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7,
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true,
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)
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kmers := kmermap.NormalizedKmerSlice(seq, nil)
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for _, kmer := range kmers {
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println(kmermap.KmerAsString(kmer))
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}
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}
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