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31 lines
845 B
Go
31 lines
845 B
Go
package obiformats
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import (
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"strings"
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"git.metabarcoding.org/lecasofts/go/oa2/pkg/obiseq"
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)
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func ParseGuessedFastSeqHeader(sequence obiseq.BioSequence) {
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if strings.HasPrefix(sequence.Definition(), "{") {
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ParseFastSeqJsonHeader(sequence)
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} else {
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ParseFastSeqOBIHeader(sequence)
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}
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}
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func IParseFastSeqHeaderBatch(iterator obiseq.IBioSequenceBatch, options ...WithOption) obiseq.IBioSequenceBatch {
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opt := MakeOptions(options)
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return iterator.MakeIWorker(obiseq.AnnotatorToSeqWorker(opt.ParseFastSeqHeader()),
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opt.ParallelWorkers(),
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opt.BufferSize())
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}
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func IParseFastSeqHeader(iterator obiseq.IBioSequence, options ...WithOption) obiseq.IBioSequence {
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opt := MakeOptions(options)
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return IParseFastSeqHeaderBatch(iterator.IBioSequenceBatch(opt.BatchSize(),
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opt.BufferSize()),
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options...).SortBatches().IBioSequence()
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}
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