mirror of
https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
43 lines
1.0 KiB
Go
43 lines
1.0 KiB
Go
package main
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import (
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"os"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obioptions"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obiconvert"
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"git.metabarcoding.org/lecasofts/go/obitools/pkg/obitools/obipairing"
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)
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func main() {
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// go tool pprof -http=":8000" ./obipairing ./cpu.pprof
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// f, err := os.Create("cpu.pprof")
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// if err != nil {
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// log.Fatal(err)
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// }
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// pprof.StartCPUProfile(f)
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// defer pprof.StopCPUProfile()
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// go tool trace cpu.trace
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// ftrace, err := os.Create("cpu.trace")
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// if err != nil {
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// log.Fatal(err)
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// }
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// trace.Start(ftrace)
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// defer trace.Stop()
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optionParser := obioptions.GenerateOptionParser(obipairing.OptionSet)
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optionParser(os.Args)
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pairs, _ := obipairing.IBatchPairedSequence()
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paired := obipairing.IAssemblePESequencesBatch(pairs,
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obipairing.GapPenality(),
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obipairing.Delta(),
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obipairing.MinOverlap(),
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obipairing.MinIdentity(),
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obipairing.WithStats(),
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obioptions.CLIParallelWorkers(),
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)
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obiconvert.WriteBioSequences(paired, true)
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}
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