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correcting paths for sumalibs submodule

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Celine Mercier
2015-07-16 14:26:29 +02:00
parent 8bd2c05d48
commit 7f6d3a8afa
3 changed files with 11 additions and 11 deletions
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10
mtcompare_sumatra.c
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@ -1,7 +1,7 @@
/*
* mtcompare.c
*
* Created on: 17 ao<61>t 2010
* Created on: 17 ao<61>t 2010
* Authors: Eric Coissac, Celine Mercier
*/
@ -10,10 +10,10 @@
#include <stdio.h>
#include <string.h>
#include "sumatra.h"
#include "../sumalibs/libfasta/sequence.h"
#include "../sumalibs/libutils/utilities.h"
#include "../sumalibs/liblcs/upperband.h"
#include "../sumalibs/liblcs/sse_banded_LCS_alignment.h"
#include "./sumalibs/libfasta/sequence.h"
#include "./sumalibs/libutils/utilities.h"
#include "./sumalibs/liblcs/upperband.h"
#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
typedef struct {

8
sumatra.c
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@ -14,10 +14,10 @@
#include <sys/time.h>
#include "../sumalibs/libfasta/sequence.h"
#include "../sumalibs/liblcs/upperband.h"
#include "../sumalibs/liblcs/sse_banded_LCS_alignment.h"
#include "../sumalibs/libutils/utilities.h"
#include "./sumalibs/libfasta/sequence.h"
#include "./sumalibs/liblcs/upperband.h"
#include "./sumalibs/liblcs/sse_banded_LCS_alignment.h"
#include "./sumalibs/libutils/utilities.h"
#include "mtcompare_sumatra.h"
#define VERSION "1.0.02"

4
sumatra.h
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@ -1,14 +1,14 @@
/*
* sumatra.h
*
* Created on: 8 ao<61>t 2010
* Created on: 8 ao<61>t 2010
* Author: coissac
*/
#ifndef SUMATRA_H_
#define SUMATRA_H_
#include "../sumalibs/libfasta/sequence.h"
#include "./sumalibs/libfasta/sequence.h"
void printResults(fastaSeqPtr seq1, fastaSeqPtr seq2, double score, BOOL extradata, int64_t pairs, BOOL print);