27 lines
910 B
Markdown
27 lines
910 B
Markdown
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# utils
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Miscellaneous index maintenance and inspection utilities.
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```bash
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obikmer utils INDEXES... [OPTIONS]
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```
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## Arguments
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| Argument | Description |
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|---|---|
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| `INDEXES...` | One or more index directories |
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## Options
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| Option | Scope | Description |
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|---|---|---|
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| `--new-label NEW=OLD` | single index only | Rename a genome label |
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| `--upgrade-index` | single index only | Add any missing layer metadata files to an older index |
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| `--bits-per-kmer` | single index only | Print bits-per-kmer statistics |
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| `--stats` | single index only | Print per-genome kmer counts as CSV |
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| `--partition-stats` | one or more indexes | Print a partition-size distribution report |
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| `--csv FILE` | with `--partition-stats` | Also write raw per-(partition, source) data to FILE as CSV |
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At least one operation option must be given. All options except `--partition-stats` require exactly one index directory.
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