2026-04-16 22:38:20 +02:00
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# obikmer
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`obikmer` is a Rust tool for manipulation, counting, indexing, and set operations on DNA sequences represented as kmer sets.
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## Constraints
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2026-05-17 10:20:22 +08:00
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- Target scale: individual genome datasets, tens of Gbases
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2026-04-16 22:38:20 +02:00
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- Maximum efficiency in computation, memory, and disk usage
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- Input formats: FASTA, FASTQ, gzip, streaming stdin
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## Priority operations
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- Kmer counting (frequencies)
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- Fast search / query
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- Set operations: union, intersection, difference
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