obikmer/sankoff_params.yaml

ratio_ceiling: 0.5
cardinality_transitions:
- from: 0
  to: 0
  count: 37622567
  probability: 0.7765461217831444
- from: 0
  to: 1
  count: 6977400
  probability: 0.14401656617768033
- from: 0
  to: 2
  count: 3744558
  probability: 0.0772893033240408
- from: 0
  to: 3
  count: 91083
  probability: 0.0018799926759482985
- from: 0
  to: 4
  count: 12985
  probability: 0.0002680160391861122
- from: 1
  to: 0
  count: 6977400
  probability: 0.820630384894398
- from: 1
  to: 1
  count: 1018042
  probability: 0.1197346000370715
- from: 1
  to: 2
  count: 502624
  probability: 0.05911493200578466
- from: 1
  to: 3
  count: 4197
  probability: 0.000493620220340211
- from: 1
  to: 4
  count: 225
  probability: 0.000026462842405658202
- from: 2
  to: 0
  count: 3744558
  probability: 0.8804244781723005
- from: 2
  to: 1
  count: 502624
  probability: 0.11817749195415704
- from: 2
  to: 2
  count: 5162
  probability: 0.0012136949558066439
- from: 2
  to: 3
  count: 688
  probability: 0.0001617632951559417
- from: 2
  to: 4
  count: 96
  probability: 0.00002257162257989884
- from: 3
  to: 0
  count: 91083
  probability: 0.9478728718311618
- from: 3
  to: 1
  count: 4197
  probability: 0.04367689297756317
- from: 3
  to: 2
  count: 688
  probability: 0.007159805186696083
- from: 3
  to: 3
  count: 98
  probability: 0.0010198559713607792
- from: 3
  to: 4
  count: 26
  probability: 0.00027057403321816594
- from: 4
  to: 0
  count: 12985
  probability: 0.972950696838004
- from: 4
  to: 1
  count: 225
  probability: 0.01685898396523303
- from: 4
  to: 2
  count: 96
  probability: 0.0071931664918327585
- from: 4
  to: 3
  count: 26
  probability: 0.0019481492582047056
- from: 4
  to: 4
  count: 14
  probability: 0.0010490034467256107
composition_transitions:
- from: 'A'
  to: 'A'
  count: 157182
  probability: 0.46648741052031767
- from: 'A'
  to: 'C'
  count: 27305
  probability: 0.08103624298111281
- from: 'A'
  to: 'G'
  count: 128548
  probability: 0.38150693875612857
- from: 'A'
  to: 'T'
  count: 23913
  probability: 0.07096940774244097
- from: 'C'
  to: 'A'
  count: 27305
  probability: 0.07823849488677553
- from: 'C'
  to: 'C'
  count: 179118
  probability: 0.5132365034656459
- from: 'C'
  to: 'G'
  count: 19392
  probability: 0.055564947549692406
- from: 'C'
  to: 'T'
  count: 123182
  probability: 0.3529600540978862
- from: 'G'
  to: 'A'
  count: 128548
  probability: 0.3637269077214298
- from: 'G'
  to: 'C'
  count: 19392
  probability: 0.05486971555009776
- from: 'G'
  to: 'G'
  count: 179245
  probability: 0.5071742039901647
- from: 'G'
  to: 'T'
  count: 26234
  probability: 0.07422917273830779
- from: 'T'
  to: 'A'
  count: 23913
  probability: 0.07307212790143376
- from: 'T'
  to: 'C'
  count: 123182
  probability: 0.3764132839524281
- from: 'T'
  to: 'G'
  count: 26234
  probability: 0.08016452153080807
- from: 'T'
  to: 'T'
  count: 153923
  probability: 0.4703500666153301