obikmer/sankoff_params.yaml

ratio_ceiling: 0.5
cardinality_transitions:
- from: 0
  to: 0
  count: 117158166
  probability: 0.8249649657257814
- from: 0
  to: 1
  count: 13707223
  probability: 0.09651891232567299
- from: 0
  to: 2
  count: 10934100
  probability: 0.07699206755884405
- from: 0
  to: 3
  count: 193315
  probability: 0.0013612205430842902
- from: 0
  to: 4
  count: 23125
  probability: 0.00016283384661730445
- from: 1
  to: 0
  count: 13707223
  probability: 0.8980473700324103
- from: 1
  to: 1
  count: 1043692
  probability: 0.06837890181868832
- from: 1
  to: 2
  count: 507953
  probability: 0.033279232106318904
- from: 1
  to: 3
  count: 4270
  probability: 0.0002797548613631216
- from: 1
  to: 4
  count: 225
  probability: 0.000014741181219368235
- from: 2
  to: 0
  count: 10934100
  probability: 0.9551033885158036
- from: 2
  to: 1
  count: 507953
  probability: 0.04437014765794788
- from: 2
  to: 2
  count: 5241
  probability: 0.00045780602511512846
- from: 2
  to: 3
  count: 690
  probability: 0.000060272115498843476
- from: 2
  to: 4
  count: 96
  probability: 8.385685634621701e-6
- from: 3
  to: 0
  count: 193315
  probability: 0.9743748708410829
- from: 3
  to: 1
  count: 4270
  probability: 0.021522285898618442
- from: 3
  to: 2
  count: 690
  probability: 0.0034778401100812
- from: 3
  to: 3
  count: 98
  probability: 0.0004939541025912429
- from: 3
  to: 4
  count: 26
  probability: 0.0001310490476262481
- from: 4
  to: 0
  count: 23125
  probability: 0.9846291407647109
- from: 4
  to: 1
  count: 225
  probability: 0.009580175423656646
- from: 4
  to: 2
  count: 96
  probability: 0.004087541514093502
- from: 4
  to: 3
  count: 26
  probability: 0.0011070424934003236
- from: 4
  to: 4
  count: 14
  probability: 0.0005960998041386358
composition_transitions:
- from: 'A'
  to: 'A'
  count: 162260
  probability: 0.47062167539692207
- from: 'A'
  to: 'C'
  count: 27810
  probability: 0.08066059899413536
- from: 'A'
  to: 'G'
  count: 130153
  probability: 0.3774979842101294
- from: 'A'
  to: 'T'
  count: 24555
  probability: 0.07121974139881315
- from: 'C'
  to: 'A'
  count: 27810
  probability: 0.07790832534920075
- from: 'C'
  to: 'C'
  count: 184633
  probability: 0.5172401234879174
- from: 'C'
  to: 'G'
  count: 19637
  probability: 0.05501207424963161
- from: 'C'
  to: 'T'
  count: 124878
  probability: 0.3498394769132503
- from: 'G'
  to: 'A'
  count: 130153
  probability: 0.36057158212891627
- from: 'G'
  to: 'C'
  count: 19637
  probability: 0.054401697680925745
- from: 'G'
  to: 'G'
  count: 184557
  probability: 0.5112906308956874
- from: 'G'
  to: 'T'
  count: 26616
  probability: 0.07373608929447062
- from: 'T'
  to: 'A'
  count: 24555
  probability: 0.07337692220342934
- from: 'T'
  to: 'C'
  count: 124878
  probability: 0.3731689387464813
- from: 'T'
  to: 'G'
  count: 26616
  probability: 0.07953574267426085
- from: 'T'
  to: 'T'
  count: 158593
  probability: 0.4739183963758285