obikmer/aloss_nofl_sankoff_params.yaml

ratio_ceiling: 0.5
cardinality_transitions:
- from: 0
  to: 0
  count: 122014779
  probability: 0.870049812090934
- from: 0
  to: 1
  count: 17966272
  probability: 0.12811195254940888
- from: 0
  to: 2
  count: 233683
  probability: 0.001666321505518981
- from: 0
  to: 3
  count: 24109
  probability: 0.00017191385413811494
- from: 0
  to: 4
  count: 0
  probability: 0.0
- from: 1
  to: 0
  count: 17966272
  probability: 0.967023782579572
- from: 1
  to: 1
  count: 602798
  probability: 0.03244523972983381
- from: 1
  to: 2
  count: 9562
  probability: 0.0005146688978673966
- from: 1
  to: 3
  count: 303
  probability: 0.00001630879272681669
- from: 1
  to: 4
  count: 0
  probability: 0.0
- from: 2
  to: 0
  count: 233683
  probability: 0.9585500516842502
- from: 2
  to: 1
  count: 9562
  probability: 0.039222603245442765
- from: 2
  to: 2
  count: 438
  probability: 0.0017966429848885097
- from: 2
  to: 3
  count: 105
  probability: 0.00043070208541847837
- from: 2
  to: 4
  count: 0
  probability: 0.0
- from: 3
  to: 0
  count: 24109
  probability: 0.9827171564831044
- from: 3
  to: 1
  count: 303
  probability: 0.012350711286838137
- from: 3
  to: 2
  count: 105
  probability: 0.004279949455834998
- from: 3
  to: 3
  count: 16
  probability: 0.0006521827742224758
- from: 3
  to: 4
  count: 0
  probability: 0.0
- from: 4
  to: 0
  count: 0
  probability: 0.0
- from: 4
  to: 1
  count: 0
  probability: 0.0
- from: 4
  to: 2
  count: 0
  probability: 0.0
- from: 4
  to: 3
  count: 0
  probability: 0.0
- from: 4
  to: 4
  count: 0
  probability: 0.0
composition_transitions:
- from: 'A'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'C'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'G'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'T'
  count: 0
  probability: 0.0
- from: 'C'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'C'
  to: 'C'
  count: 96389
  probability: 0.9663832688335907
- from: 'C'
  to: 'G'
  count: 1290
  probability: 0.012933368089671353
- from: 'C'
  to: 'T'
  count: 2063
  probability: 0.020683363076737984
- from: 'G'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'G'
  to: 'C'
  count: 1290
  probability: 0.005696948820201646
- from: 'G'
  to: 'G'
  count: 222720
  probability: 0.9835848381669073
- from: 'G'
  to: 'T'
  count: 2427
  probability: 0.010718213012891003
- from: 'T'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'T'
  to: 'C'
  count: 2063
  probability: 0.007305266661709142
- from: 'T'
  to: 'G'
  count: 2427
  probability: 0.008594223067362136
- from: 'T'
  to: 'T'
  count: 277909
  probability: 0.9841005102709287