20 lines
592 B
Markdown
20 lines
592 B
Markdown
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# unitig
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Dump the unitigs of an index as FASTA. A unitig is a maximal non-branching path through the de Bruijn graph implied by the index's kmers; the concatenation of every unitig reconstructs every stored kmer exactly once.
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```bash
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obikmer unitig INDEX [OPTIONS]
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```
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## Arguments
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| Argument | Description |
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|---|---|
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| `INDEX` | Index directory |
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## Options
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`unitig` accepts the shared [predicate options](filter.md#predicate-options) (`--ingroup`, `--outgroup`, `--min-count`, etc.) to restrict which kmers are included before the unitigs are enumerated.
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Output is FASTA on stdout.
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