obikmer/aloss_sankoff_params.yaml

ratio_ceiling: 0.5
cardinality_transitions:
- from: 0
  to: 0
  count: 13019012
  probability: 0.8682962128540935
- from: 0
  to: 1
  count: 1945560
  probability: 0.12975810913150784
- from: 0
  to: 2
  count: 26381
  probability: 0.0017594670310852958
- from: 0
  to: 3
  count: 2792
  probability: 0.000186210983313375
- from: 0
  to: 4
  count: 0
  probability: 0.0
- from: 1
  to: 0
  count: 1945560
  probability: 0.9666005228573729
- from: 1
  to: 1
  count: 66078
  probability: 0.03282912341401421
- from: 1
  to: 2
  count: 1123
  probability: 0.0005579331334776772
- from: 1
  to: 3
  count: 25
  probability: 0.000012420595135300028
- from: 1
  to: 4
  count: 0
  probability: 0.0
- from: 2
  to: 0
  count: 26381
  probability: 0.9567346050627402
- from: 2
  to: 1
  count: 1123
  probability: 0.04072677159643142
- from: 2
  to: 2
  count: 51
  probability: 0.0018495684340320592
- from: 2
  to: 3
  count: 19
  probability: 0.0006890549067962574
- from: 2
  to: 4
  count: 0
  probability: 0.0
- from: 3
  to: 0
  count: 2792
  probability: 0.9841381741275996
- from: 3
  to: 1
  count: 25
  probability: 0.008812125484666901
- from: 3
  to: 2
  count: 19
  probability: 0.0066972153683468455
- from: 3
  to: 3
  count: 1
  probability: 0.00035248501938667606
- from: 3
  to: 4
  count: 0
  probability: 0.0
- from: 4
  to: 0
  count: 0
  probability: 0.0
- from: 4
  to: 1
  count: 0
  probability: 0.0
- from: 4
  to: 2
  count: 0
  probability: 0.0
- from: 4
  to: 3
  count: 0
  probability: 0.0
- from: 4
  to: 4
  count: 0
  probability: 0.0
composition_transitions:
- from: 'A'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'C'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'G'
  count: 0
  probability: 0.0
- from: 'A'
  to: 'T'
  count: 0
  probability: 0.0
- from: 'C'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'C'
  to: 'C'
  count: 10771
  probability: 0.9619540948468339
- from: 'C'
  to: 'G'
  count: 163
  probability: 0.014557470751094042
- from: 'C'
  to: 'T'
  count: 263
  probability: 0.023488434402071982
- from: 'G'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'G'
  to: 'C'
  count: 163
  probability: 0.006662851536952256
- from: 'G'
  to: 'G'
  count: 24073
  probability: 0.9840173315892741
- from: 'G'
  to: 'T'
  count: 228
  probability: 0.009319816873773708
- from: 'T'
  to: 'A'
  count: 0
  probability: 0.0
- from: 'T'
  to: 'C'
  count: 263
  probability: 0.008464484567603231
- from: 'T'
  to: 'G'
  count: 228
  probability: 0.007338032248720672
- from: 'T'
  to: 'T'
  count: 30580
  probability: 0.9841974831836761