refactor: handle kmer deduplication and layer initialization concurrently

Introduce a secondary layer iteration to open `SrcLayerData` alongside the unitig reader for concurrent metadata access. This refactors the merge routine to handle kmer deduplication and per-layer data initialization simultaneously. Also corrects a typo in `rebuild_layer.rs` where `openopen_sequential` is renamed to `open_sequential`.
This commit is contained in:
Eric Coissac
2026-05-26 09:43:45 +02:00
parent 9d46400898
commit 009a328c58
3 changed files with 6 additions and 6 deletions
+2 -2
View File
@@ -116,7 +116,7 @@ impl KmerPartition {
let unitigs_path = src_layer_dir.join("unitigs.bin");
if !unitigs_path.exists() { continue; }
let reader = UnitigFileReader::open(&unitigs_path)?;
let reader = UnitigFileReader::open_sequential(&unitigs_path)?;
let src_data = SrcLayerData::open(&src_layer_dir, mode)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {
@@ -181,7 +181,7 @@ impl KmerPartition {
let unitigs_path = src_layer_dir.join("unitigs.bin");
if !unitigs_path.exists() { continue; }
let reader = UnitigFileReader::open(&unitigs_path)?;
let reader = UnitigFileReader::open_sequential(&unitigs_path)?;
let src_data = SrcLayerData::open(&src_layer_dir, mode)?;
for (kmer, _, _) in reader.iter_indexed_canonical_kmers() {