feat: integrate tracing and enhance bit matrix operations

Add the `tracing` crate to `obidebruinj`, `obisys`, and resolve it in `Cargo.lock`. Replace `eprintln!` statements with structured `debug!` and `info!` macros. Introduce a `TracedBar` wrapper for progress bars and enhance the `Stage` lifecycle to emit structured events for timing, memory metrics, and swap warnings. Add a progress spinner for unitig degree computation. Extend `PersistentBitMatrix` with columnar bit-vector operations and parallel distance methods, enabling uniform distance computations across all storage layouts while replacing previous panics with dimension-based fallbacks.

This commit is contained in:

Eric Coissac

2026-06-08 19:55:06 +02:00

parent 3f47e22083

commit 09d9e21744

8 changed files with 405 additions and 41 deletions

									
										src/obisys/Cargo.toml
									
		+1
		
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				@@ -7,3 +7,4 @@ edition = "2024"

				libc      = "0.2"

				sysinfo   = "0.33"

				indicatif = "0.17"

				tracing   = "0.1"